Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10363
Genomic locus:	chr17:31939624-31958497
Size/Length:	18873 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010831
Gene Symbol:	Sik1
Chromosome:	chr17
TSS:	31981194 (Transcription start site)
TES:	31992737 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:31939624-31958497
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10363

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035059	mSE_10363	chr17	31939624	31940558	934	218.46
CM035060	mSE_10363	chr17	31941876	31944582	2706	1697.75
CM035061	mSE_10363	chr17	31944796	31948617	3821	1798.56
CM035062	mSE_10363	chr17	31955216	31958497	3281	1489.61