Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10365
Genomic locus:	chr6:100325638-100340943
Size/Length:	15305 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019743
Gene Symbol:	Rybp
Chromosome:	chr3
TSS:	72423743 (Transcription start site)
TES:	72495774 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10365

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036653	mSE_10365	chr6	100325638	100331388	5750	3100
CM036654	mSE_10365	chr6	100334449	100336431	1982	896.64
CM036655	mSE_10365	chr6	100336822	100337395	573	130.2
CM036656	mSE_10365	chr6	100339678	100340943	1265	275.12