Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10366
Genomic locus:	chr16:29655947-29685642
Size/Length:	29695 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001199177
Gene Symbol:	Opa1
Chromosome:	chr16
TSS:	29579419 (Transcription start site)
TES:	29654688 (Transcription end site)
Strand:	+
Number of Exons:	30
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:29655947-29685642
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10366

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034915	mSE_10366	chr16	29655947	29659720	3773	1801.01
CM034916	mSE_10366	chr16	29663937	29664622	685	103.74
CM034917	mSE_10366	chr16	29666506	29668137	1631	427.24
CM034918	mSE_10366	chr16	29679361	29680576	1215	333.44
CM034919	mSE_10366	chr16	29682055	29684812	2757	2560.33
CM034920	mSE_10366	chr16	29684883	29685642	759	111.94