Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10369
Genomic locus: chr1:135559261-135569106
Size/Length: 9845 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_144530
Gene Symbol: Zc3h11a
Chromosome: chr1
TSS: 135516447 (Transcription start site)
TES: 135557976 (Transcription end site)
Strand: -
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:135559261-135569106
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10369

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033454 mSE_10369 chr1 135559261 135561962 2701 2921.35
CM033455 mSE_10369 chr1 135561994 135562829 835 124.49
CM033456 mSE_10369 chr1 135563272 135564217 945 266.31
CM033457 mSE_10369 chr1 135565319 135565933 614 248.66
CM033458 mSE_10369 chr1 135565944 135569106 3162 2990.16