Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10371
Genomic locus:	chr3:35618072-35631824
Size/Length:	13752 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_029570
Gene Symbol:	Atp11b
Chromosome:	chr3
TSS:	35653059 (Transcription start site)
TES:	35755198 (Transcription end site)
Strand:	+
Number of Exons:	30
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:35618072-35631824
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10371

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035812	mSE_10371	chr3	35618072	35621597	3525	3100
CM035813	mSE_10371	chr3	35621658	35623590	1932	2243.72
CM035814	mSE_10371	chr3	35623990	35624913	923	528.58
CM035815	mSE_10371	chr3	35625017	35625802	785	188.14
CM035816	mSE_10371	chr3	35631137	35631824	687	333.88