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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10372
Genomic locus: chr14:65198192-65218709
Size/Length: 20517 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NR_029813
Gene Symbol: Mir124a-1
Chromosome: chr14
TSS: 65209493 (Transcription start site)
TES: 65209578 (Transcription end site)
Strand: +
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr14:65198192-65218709
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10372

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034600 mSE_10372 chr14 65198192 65199894 1702 337.04
CM034601 mSE_10372 chr14 65207511 65208459 948 98.6
CM034602 mSE_10372 chr14 65208460 65209843 1383 602.78
CM034603 mSE_10372 chr14 65209851 65214088 4237 2231.53
CM034604 mSE_10372 chr14 65214122 65215506 1384 2174.73
CM034605 mSE_10372 chr14 65215654 65217726 2072 489.75
CM034606 mSE_10372 chr14 65218169 65218709 540 133.5