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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10375
Genomic locus: chr19:55786552-55819071
Size/Length: 32519 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001142918
Gene Symbol: Tcf7l2
Chromosome: chr19
TSS: 55816299 (Transcription start site)
TES: 56008145 (Transcription end site)
Strand: +
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr19:55786552-55819071
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10375

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035463 mSE_10375 chr19 55786552 55791335 4783 2531
CM035464 mSE_10375 chr19 55792723 55793881 1158 150.86
CM035465 mSE_10375 chr19 55796506 55797263 757 90.68
CM035466 mSE_10375 chr19 55803335 55805368 2033 279.53
CM035467 mSE_10375 chr19 55810662 55811442 780 169.83
CM035468 mSE_10375 chr19 55815442 55816140 698 101.07
CM035469 mSE_10375 chr19 55816646 55817497 851 180.9
CM035470 mSE_10375 chr19 55817773 55819071 1298 515.48