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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10376
Genomic locus: chr11:52153159-52185479
Size/Length: 32320 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_011694
Gene Symbol: Vdac1
Chromosome: chr11
TSS: 52174616 (Transcription start site)
TES: 52202898 (Transcription end site)
Strand: +
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:52153159-52185479
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10376

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033921 mSE_10376 chr11 52153159 52154955 1796 114
CM033922 mSE_10376 chr11 52159569 52160678 1109 226.75
CM033923 mSE_10376 chr11 52164644 52165509 865 96.54
CM033924 mSE_10376 chr11 52171604 52175496 3892 3100
CM033925 mSE_10376 chr11 52182085 52183042 957 216.12
CM033926 mSE_10376 chr11 52183280 52185479 2199 372.51