Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10377
Genomic locus:	chr18:77946505-77972476
Size/Length:	25971 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_027978
Gene Symbol:	4930465K10Rik
Chromosome:	chr18
TSS:	77952922 (Transcription start site)
TES:	77954184 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr18:77946505-77972476
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10377

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035307	mSE_10377	chr18	77946505	77947022	517	128.58
CM035308	mSE_10377	chr18	77947251	77948481	1230	326.47
CM035309	mSE_10377	chr18	77952825	77953478	653	332.8
CM035310	mSE_10377	chr18	77957653	77961753	4100	3176.75
CM035311	mSE_10377	chr18	77961951	77962316	365	187.72
CM035312	mSE_10377	chr18	77962417	77963778	1361	629.95
CM035313	mSE_10377	chr18	77964777	77965669	892	143.35
CM035314	mSE_10377	chr18	77970560	77972476	1916	191.11