Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10379
Genomic locus:	chr7:119822952-119841531
Size/Length:	18579 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009346
Gene Symbol:	Tead1
Chromosome:	chr7
TSS:	119822833 (Transcription start site)
TES:	120050319 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:119822952-119841531
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10379

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036979	mSE_10379	chr7	119822952	119825023	2071	673.55
CM036980	mSE_10379	chr7	119827942	119829385	1443	266.59
CM036981	mSE_10379	chr7	119830795	119832069	1274	460.4
CM036982	mSE_10379	chr7	119832131	119832918	787	706.15
CM036983	mSE_10379	chr7	119833268	119836605	3337	3111.51
CM036984	mSE_10379	chr7	119840114	119841531	1417	216.63