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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10380
Genomic locus: chr5:134893716-134922573
Size/Length: 28857 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001081469
Gene Symbol: Gtf2ird1
Chromosome: chr5
TSS: 134833530 (Transcription start site)
TES: 134932586 (Transcription end site)
Strand: -
Number of Exons: 28
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr5:134893716-134922573
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10380

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036505 mSE_10380 chr5 134893716 134896208 2492 535.64
CM036506 mSE_10380 chr5 134896501 134900270 3769 1520.94
CM036507 mSE_10380 chr5 134911334 134914087 2753 283.67
CM036508 mSE_10380 chr5 134914130 134915089 959 342.91
CM036509 mSE_10380 chr5 134915198 134916857 1659 648.45
CM036510 mSE_10380 chr5 134919981 134921065 1084 101.62
CM036511 mSE_10380 chr5 134921081 134922573 1492 464.81