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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10383
Genomic locus: chr8:124355612-124377935
Size/Length: 22323 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_145605
Gene Symbol: Klhdc4
Chromosome: chr8
TSS: 124320207 (Transcription start site)
TES: 124353469 (Transcription end site)
Strand: -
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:124355612-124377935
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10383

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037368 mSE_10383 chr8 124355612 124356876 1264 813.05
CM037369 mSE_10383 chr8 124365040 124366885 1845 1496.77
CM037370 mSE_10383 chr8 124368459 124369943 1484 201.38
CM037371 mSE_10383 chr8 124370022 124371586 1564 201.61
CM037372 mSE_10383 chr8 124371775 124373025 1250 108.34
CM037373 mSE_10383 chr8 124374110 124376924 2814 916.48
CM037374 mSE_10383 chr8 124377007 124377935 928 117.49