Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10391
Genomic locus:	chr11:19728801-19751496
Size/Length:	22695 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_033523
Gene Symbol:	Spred2
Chromosome:	chr11
TSS:	19824444 (Transcription start site)
TES:	19922600 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:19728801-19751496
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10391

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033832	mSE_10391	chr11	19728801	19730989	2188	637.45
CM033833	mSE_10391	chr11	19734726	19736310	1584	341.79
CM033834	mSE_10391	chr11	19736329	19737668	1339	631.23
CM033835	mSE_10391	chr11	19737821	19738603	782	195.42
CM033836	mSE_10391	chr11	19747478	19751496	4018	2167.75