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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10393
Genomic locus: chr11:101628664-101650475
Size/Length: 21811 bp
Genome: Mouse -
Cell/Tissue: Embryonic stem cells
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008815
Gene Symbol: Etv4
Chromosome: chr17
TSS: 41605210 (Transcription start site)
TES: 41623800 (Transcription end site)
Strand: -
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10393

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034156 mSE_10393 chr11 101628664 101629730 1066 128.3
CM034157 mSE_10393 chr11 101629747 101632168 2421 450.61
CM034158 mSE_10393 chr11 101632315 101633927 1612 342.03
CM034159 mSE_10393 chr11 101634110 101634645 535 135.02
CM034160 mSE_10393 chr11 101638111 101640527 2416 427.58
CM034161 mSE_10393 chr11 101644169 101645709 1540 227.5
CM034162 mSE_10393 chr11 101645807 101646645 838 292.58
CM034163 mSE_10393 chr11 101646689 101650475 3786 2076.03