Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10397
Genomic locus:	chr3:88291985-88317170
Size/Length:	25185 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019390
Gene Symbol:	Lmna
Chromosome:	chr3
TSS:	88287126 (Transcription start site)
TES:	88297234 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:88291985-88317170
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10397

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035862	mSE_10397	chr3	88291985	88293293	1308	169.17
CM035863	mSE_10397	chr3	88296293	88296951	658	130.47
CM035864	mSE_10397	chr3	88296975	88300236	3261	957.05
CM035865	mSE_10397	chr3	88308659	88310744	2085	341.37
CM035866	mSE_10397	chr3	88312997	88317170	4173	2044.61