Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10401
Genomic locus:	chr11:107208558-107235296
Size/Length:	26738 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_145823
Gene Symbol:	Pitpnc1
Chromosome:	chr11
TSS:	107069205 (Transcription start site)
TES:	107332034 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:107208558-107235296
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10401

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034188	mSE_10401	chr11	107208558	107209776	1218	129.19
CM034189	mSE_10401	chr11	107210288	107212004	1716	201.59
CM034190	mSE_10401	chr11	107212273	107213684	1411	435.13
CM034191	mSE_10401	chr11	107213724	107218677	4953	3118.35
CM034192	mSE_10401	chr11	107219720	107220836	1116	135.33
CM034193	mSE_10401	chr11	107220864	107221543	679	123.28
CM034194	mSE_10401	chr11	107226698	107228684	1986	309.02
CM034195	mSE_10401	chr11	107231844	107232781	937	139.07
CM034196	mSE_10401	chr11	107234746	107235296	550	130.73