Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10403
Genomic locus:	chr16:48297464-48321041
Size/Length:	23577 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_028615
Gene Symbol:	Dppa2
Chromosome:	chr16
TSS:	48310386 (Transcription start site)
TES:	48319626 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:48297464-48321041
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10403

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034941	mSE_10403	chr16	48297464	48298428	964	266.01
CM034942	mSE_10403	chr16	48302358	48304479	2121	2476.48
CM034943	mSE_10403	chr16	48304602	48305188	586	92.17
CM034944	mSE_10403	chr16	48306037	48306896	859	284.91
CM034945	mSE_10403	chr16	48307962	48310367	2405	1324.41
CM034946	mSE_10403	chr16	48310882	48312250	1368	1298.37
CM034947	mSE_10403	chr16	48314111	48314796	685	122.94
CM034948	mSE_10403	chr16	48319589	48321041	1452	518.06