Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10405
Genomic locus:	chr11:76098473-76109985
Size/Length:	11512 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_183263
Gene Symbol:	Rnmtl1
Chromosome:	chr17
TSS:	685512 (Transcription start site)
TES:	695741 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10405

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033963	mSE_10405	chr11	76098473	76102697	4224	1794.2
CM033964	mSE_10405	chr11	76102987	76105028	2041	419.51
CM033965	mSE_10405	chr11	76105554	76109985	4431	1742.81