Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10407
Genomic locus: chr6:67169385-67194522
Size/Length: 25137 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001113566
Gene Symbol: Serbp1
Chromosome: chr6
TSS: 67216972 (Transcription start site)
TES: 67239296 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:67169385-67194522
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10407

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036628 mSE_10407 chr6 67169385 67169812 427 92.7
CM036629 mSE_10407 chr6 67175853 67176765 912 239.71
CM036630 mSE_10407 chr6 67178128 67180553 2425 624.54
CM036631 mSE_10407 chr6 67185631 67187953 2322 2493.34
CM036632 mSE_10407 chr6 67188107 67189549 1442 2921.11
CM036633 mSE_10407 chr6 67193843 67194522 679 160.33