Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10412
Genomic locus:	chr19:32312179-32346913
Size/Length:	34734 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001168526
Gene Symbol:	Sgms1
Chromosome:	chr19
TSS:	32197216 (Transcription start site)
TES:	32285503 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:32312179-32346913
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10412

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035410	mSE_10412	chr19	32312179	32313526	1347	186.49
CM035411	mSE_10412	chr19	32314384	32315426	1042	483.13
CM035412	mSE_10412	chr19	32315428	32318291	2863	1358.65
CM035413	mSE_10412	chr19	32326878	32327628	750	101.91
CM035414	mSE_10412	chr19	32328043	32328652	609	102.28
CM035415	mSE_10412	chr19	32329102	32330235	1133	1696.35
CM035416	mSE_10412	chr19	32330694	32331697	1003	195.92
CM035417	mSE_10412	chr19	32331961	32332420	459	93.87
CM035418	mSE_10412	chr19	32334023	32334487	464	91.46
CM035419	mSE_10412	chr19	32334939	32335530	591	167.55
CM035420	mSE_10412	chr19	32345858	32346913	1055	214.65