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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10416
Genomic locus: chr5:125872741-125890908
Size/Length: 18167 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_019639
Gene Symbol: Ubc
Chromosome: chr5
TSS: 125866334 (Transcription start site)
TES: 125870387 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr5:125872741-125890908
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10416

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036486 mSE_10416 chr5 125872741 125873580 839 420.84
CM036487 mSE_10416 chr5 125873659 125875664 2005 1248.12
CM036488 mSE_10416 chr5 125881158 125881927 769 114.08
CM036489 mSE_10416 chr5 125882934 125883729 795 200.99
CM036490 mSE_10416 chr5 125884977 125886090 1113 323.91
CM036491 mSE_10416 chr5 125886503 125888230 1727 1035.34
CM036492 mSE_10416 chr5 125889914 125890908 994 211.27