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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10423
Genomic locus: chrX:155945476-155967921
Size/Length: 22445 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001033472
Gene Symbol: A830080D01Rik
Chromosome: chrX
TSS: 155970599 (Transcription start site)
TES: 156031013 (Transcription end site)
Strand: +
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chrX:155945476-155967921
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10423

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037617 mSE_10423 chrX 155945476 155946579 1103 229.05
CM037618 mSE_10423 chrX 155947973 155949835 1862 1281.35
CM037619 mSE_10423 chrX 155953987 155954480 493 91.29
CM037620 mSE_10423 chrX 155955128 155955666 538 209.65
CM037621 mSE_10423 chrX 155955958 155959599 3641 2247.31
CM037622 mSE_10423 chrX 155959853 155960236 383 397.02
CM037623 mSE_10423 chrX 155960579 155961108 529 207.71
CM037624 mSE_10423 chrX 155964195 155966599 2404 1131.67
CM037625 mSE_10423 chrX 155966927 155967921 994 458.12