Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10425
Genomic locus:	chr1:183957988-183971305
Size/Length:	13317 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010135
Gene Symbol:	Enah
Chromosome:	chr1
TSS:	183826515 (Transcription start site)
TES:	183950111 (Transcription end site)
Strand:	-
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:183957988-183971305
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10425

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033557	mSE_10425	chr1	183957988	183960006	2018	745.53
CM033558	mSE_10425	chr1	183960159	183963286	3127	2811.13
CM033559	mSE_10425	chr1	183963364	183963808	444	130.58
CM033560	mSE_10425	chr1	183964061	183964673	612	150.83
CM033561	mSE_10425	chr1	183970341	183971305	964	111.91