Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10430
Genomic locus:	chr2:180458555-180478289
Size/Length:	19734 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_183161
Gene Symbol:	Slc17a9
Chromosome:	chr2
TSS:	180460043 (Transcription start site)
TES:	180476983 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:180458555-180478289
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10430

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035784	mSE_10430	chr2	180458555	180463931	5376	2150.57
CM035785	mSE_10430	chr2	180465399	180467644	2245	289.71
CM035786	mSE_10430	chr2	180473952	180476808	2856	1200.03
CM035787	mSE_10430	chr2	180477331	180478289	958	141.95