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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10431
Genomic locus: chr11:101464946-101498954
Size/Length: 34008 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_025654
Gene Symbol: Rdm1
Chromosome: chr11
TSS: 101489262 (Transcription start site)
TES: 101497395 (Transcription end site)
Strand: +
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:101464946-101498954
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10431

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034150 mSE_10431 chr11 101464946 101466374 1428 336.28
CM034151 mSE_10431 chr11 101478060 101480412 2352 668.24
CM034152 mSE_10431 chr11 101485523 101486134 611 157.72
CM034153 mSE_10431 chr11 101486401 101487276 875 202.18
CM034154 mSE_10431 chr11 101487416 101490253 2837 2681.4
CM034155 mSE_10431 chr11 101498330 101498954 624 106.96