Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10432
Genomic locus:	chr4:98391557-98414737
Size/Length:	23180 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081202
Gene Symbol:	L1td1
Chromosome:	chr4
TSS:	98393444 (Transcription start site)
TES:	98405177 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:98391557-98414737
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10432

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036068	mSE_10432	chr4	98391557	98396344	4787	3100
CM036069	mSE_10432	chr4	98396983	98398836	1853	330.84
CM036070	mSE_10432	chr4	98403914	98404635	721	91.14
CM036071	mSE_10432	chr4	98405137	98406243	1106	108.1
CM036072	mSE_10432	chr4	98414145	98414737	592	135.94