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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10434
Genomic locus: chr11:79944258-79961677
Size/Length: 17419 bp
Genome: Mouse -
Cell/Tissue: Embryonic stem cells
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: 1110002N22Rik
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10434

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033998 mSE_10434 chr11 79944258 79947429 3171 2202.6
CM033999 mSE_10434 chr11 79948147 79949006 859 233.39
CM034000 mSE_10434 chr11 79949248 79949720 472 274.75
CM034001 mSE_10434 chr11 79949813 79951875 2062 943.22
CM034002 mSE_10434 chr11 79951890 79954079 2189 735.06
CM034003 mSE_10434 chr11 79955034 79957124 2090 361.74
CM034004 mSE_10434 chr11 79961107 79961677 570 98.34