Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10436
Genomic locus:	chr11:115804974-115833454
Size/Length:	28480 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_133663
Gene Symbol:	Itgb4
Chromosome:	chr11
TSS:	115836038 (Transcription start site)
TES:	115869725 (Transcription end site)
Strand:	+
Number of Exons:	39
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:115804974-115833454
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10436

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034234	mSE_10436	chr11	115804974	115805821	847	133.53
CM034235	mSE_10436	chr11	115805877	115808662	2785	1983.39
CM034236	mSE_10436	chr11	115817852	115819711	1859	347.96
CM034237	mSE_10436	chr11	115821189	115822189	1000	145.69
CM034238	mSE_10436	chr11	115830504	115833454	2950	1112.21