Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10440
Genomic locus:	chr5:108499963-108510733
Size/Length:	10770 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001253880
Gene Symbol:	Mtf2
Chromosome:	chr5
TSS:	108494692 (Transcription start site)
TES:	108538238 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:108499963-108510733
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10440

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036406	mSE_10440	chr5	108499963	108500396	433	91.89
CM036407	mSE_10440	chr5	108501647	108502715	1068	515.14
CM036408	mSE_10440	chr5	108502748	108503716	968	893.24
CM036409	mSE_10440	chr5	108503866	108507521	3655	3100
CM036410	mSE_10440	chr5	108507571	108508140	569	382.29
CM036411	mSE_10440	chr5	108508339	108508756	417	156.57
CM036412	mSE_10440	chr5	108509158	108509675	517	202.84
CM036413	mSE_10440	chr5	108510413	108510733	320	120.7