Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10443
Genomic locus:	chr16:4585584-4609344
Size/Length:	23760 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_031184
Gene Symbol:	Glis2
Chromosome:	chr16
TSS:	4594712 (Transcription start site)
TES:	4615957 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:4585584-4609344
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10443

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034851	mSE_10443	chr16	4585584	4586665	1081	903.15
CM034852	mSE_10443	chr16	4586775	4588375	1600	676.23
CM034853	mSE_10443	chr16	4593175	4594310	1135	221.1
CM034854	mSE_10443	chr16	4600238	4604322	4084	1045.77
CM034855	mSE_10443	chr16	4607027	4609344	2317	507.08