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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10444
Genomic locus: chr1:89113580-89130710
Size/Length: 17130 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001039170
Gene Symbol: Eif4e2
Chromosome: chr1
TSS: 89110488 (Transcription start site)
TES: 89125433 (Transcription end site)
Strand: +
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:89113580-89130710
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10444

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033411 mSE_10444 chr1 89113580 89114073 493 93.28
CM033412 mSE_10444 chr1 89114245 89115411 1166 277.46
CM033413 mSE_10444 chr1 89120398 89121218 820 179.99
CM033414 mSE_10444 chr1 89121560 89122165 605 368.06
CM033415 mSE_10444 chr1 89122224 89123076 852 1353.36
CM033416 mSE_10444 chr1 89123194 89124821 1627 1601.4
CM033417 mSE_10444 chr1 89125542 89127500 1958 603.48
CM033418 mSE_10444 chr1 89127724 89130710 2986 319.99