Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10450
Genomic locus:	chr17:53691108-53713030
Size/Length:	21922 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001190846
Gene Symbol:	Kat2b
Chromosome:	chr17
TSS:	53723450 (Transcription start site)
TES:	53812046 (Transcription end site)
Strand:	+
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:53691108-53713030
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10450

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035140	mSE_10450	chr17	53691108	53691873	765	158.29
CM035141	mSE_10450	chr17	53695468	53696007	539	115.67
CM035142	mSE_10450	chr17	53696645	53697262	617	161.97
CM035143	mSE_10450	chr17	53697777	53699469	1692	869.49
CM035144	mSE_10450	chr17	53699728	53700209	481	102.68
CM035145	mSE_10450	chr17	53700377	53701127	750	281.97
CM035146	mSE_10450	chr17	53702082	53706396	4314	1936.83
CM035147	mSE_10450	chr17	53706580	53707464	884	125.67
CM035148	mSE_10450	chr17	53708638	53710427	1789	1030.13
CM035149	mSE_10450	chr17	53712471	53713030	559	147.93