Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10451
Genomic locus:	chr15:7062482-7069393
Size/Length:	6911 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013584
Gene Symbol:	Lifr
Chromosome:	chr15
TSS:	7090541 (Transcription start site)
TES:	7147489 (Transcription end site)
Strand:	+
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:7062482-7069393
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10451

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034666	mSE_10451	chr15	7062482	7063110	628	143.74
CM034667	mSE_10451	chr15	7063613	7064597	984	448.87
CM034668	mSE_10451	chr15	7064758	7067505	2747	3100
CM034669	mSE_10451	chr15	7067920	7069393	1473	417.05