Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10455
Genomic locus:	chr18:21089429-21105968
Size/Length:	16539 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026301
Gene Symbol:	Rnf125
Chromosome:	chr18
TSS:	21103125 (Transcription start site)
TES:	21142349 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr18:21089429-21105968
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10455

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035228	mSE_10455	chr18	21089429	21090718	1289	270.42
CM035229	mSE_10455	chr18	21090932	21091557	625	230.44
CM035230	mSE_10455	chr18	21091639	21092259	620	242.41
CM035231	mSE_10455	chr18	21094767	21095710	943	188.11
CM035232	mSE_10455	chr18	21100046	21100888	842	175.86
CM035233	mSE_10455	chr18	21101049	21103845	2796	3024.53
CM035234	mSE_10455	chr18	21103871	21105968	2097	929.07