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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10459
Genomic locus: chr10:27706582-27735969
Size/Length: 29387 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008983
Gene Symbol: Ptprk
Chromosome: chr10
TSS: 27794625 (Transcription start site)
TES: 28317203 (Transcription end site)
Strand: +
Number of Exons: 32
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr10:27706582-27735969
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10459

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033603 mSE_10459 chr10 27706582 27706960 378 99.84
CM033604 mSE_10459 chr10 27710117 27711993 1876 387
CM033605 mSE_10459 chr10 27712531 27716459 3928 1562.01
CM033606 mSE_10459 chr10 27728190 27728955 765 150.69
CM033607 mSE_10459 chr10 27729255 27731438 2183 837.94
CM033608 mSE_10459 chr10 27731467 27734618 3151 2416.93
CM033609 mSE_10459 chr10 27735078 27735460 382 403.29
CM033610 mSE_10459 chr10 27735607 27735969 362 120.52