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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10461
Genomic locus: chr9:99300923-99328634
Size/Length: 27711 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008624
Gene Symbol: Mras
Chromosome: chr9
TSS: 99285838 (Transcription start site)
TES: 99337131 (Transcription end site)
Strand: -
Number of Exons: 6
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr9:99300923-99328634
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10461

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037560 mSE_10461 chr9 99300923 99302492 1569 132.28
CM037561 mSE_10461 chr9 99314423 99316690 2267 969.18
CM037562 mSE_10461 chr9 99316753 99319751 2998 782.62
CM037563 mSE_10461 chr9 99319899 99323273 3374 1225.97
CM037564 mSE_10461 chr9 99323733 99326482 2749 265.09
CM037565 mSE_10461 chr9 99328054 99328634 580 130.72