Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10462
Genomic locus:	chr13:63369758-63395777
Size/Length:	26019 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_029530
Gene Symbol:	Mir23b
Chromosome:	chr13
TSS:	63401791 (Transcription start site)
TES:	63401865 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:63369758-63395777
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10462

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034478	mSE_10462	chr13	63369758	63370346	588	93.56
CM034479	mSE_10462	chr13	63371117	63372394	1277	638.46
CM034480	mSE_10462	chr13	63373005	63376474	3469	2928.79
CM034481	mSE_10462	chr13	63380006	63380799	793	158.29
CM034482	mSE_10462	chr13	63380838	63382643	1805	635.34
CM034483	mSE_10462	chr13	63394676	63395777	1101	101.5