Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10463
Genomic locus:	chr3:83983800-83998922
Size/Length:	15122 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_036654
Gene Symbol:	Gm6525
Chromosome:	chr3
TSS:	83978559 (Transcription start site)
TES:	83979115 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:83983800-83998922
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10463

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035822	mSE_10463	chr3	83983800	83986299	2499	2997.16
CM035823	mSE_10463	chr3	83992730	83993942	1212	787.59
CM035824	mSE_10463	chr3	83993983	83996306	2323	643.13
CM035825	mSE_10463	chr3	83996903	83997732	829	95.83
CM035826	mSE_10463	chr3	83997849	83998922	1073	289.86