Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10468
Genomic locus:	chr5:109979746-109988185
Size/Length:	8439 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_016715
Gene Symbol:	Crlf2
Chromosome:	chrX
TSS:	1314893 (Transcription start site)
TES:	1331616 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10468

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036414	mSE_10468	chr5	109979746	109981182	1436	346.09
CM036415	mSE_10468	chr5	109981188	109981970	782	172.04
CM036416	mSE_10468	chr5	109982005	109983192	1187	768.75
CM036417	mSE_10468	chr5	109983223	109984134	911	257.26
CM036418	mSE_10468	chr5	109984239	109988185	3946	1326.77