Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10471
Genomic locus:	chr11:45899927-45934108
Size/Length:	34181 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009616
Gene Symbol:	Adam19
Chromosome:	chr11
TSS:	45869485 (Transcription start site)
TES:	45960849 (Transcription end site)
Strand:	+
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:45899927-45934108
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10471

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033913	mSE_10471	chr11	45899927	45901536	1609	436.27
CM033914	mSE_10471	chr11	45903923	45905194	1271	165.15
CM033915	mSE_10471	chr11	45908551	45910022	1471	160.39
CM033916	mSE_10471	chr11	45919264	45920580	1316	344.74
CM033917	mSE_10471	chr11	45920694	45921532	838	338.96
CM033918	mSE_10471	chr11	45927432	45928779	1347	1251.31
CM033919	mSE_10471	chr11	45928816	45930058	1242	833.18
CM033920	mSE_10471	chr11	45932527	45934108	1581	348.52