Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10475
Genomic locus:	chr16:93789570-93827777
Size/Length:	38207 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001045529
Gene Symbol:	Morc3
Chromosome:	chr16
TSS:	93832365 (Transcription start site)
TES:	93876318 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:93789570-93827777
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10475

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034979	mSE_10475	chr16	93789570	93790499	929	146.61
CM034980	mSE_10475	chr16	93790608	93791666	1058	376.57
CM034981	mSE_10475	chr16	93794664	93795536	872	241.86
CM034982	mSE_10475	chr16	93807900	93808917	1017	120.43
CM034983	mSE_10475	chr16	93815845	93818048	2203	3100
CM034984	mSE_10475	chr16	93825040	93826720	1680	845.96
CM034985	mSE_10475	chr16	93826978	93827777	799	314.18