Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10478
Genomic locus:	chr8:97691291-97714576
Size/Length:	23285 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001145832
Gene Symbol:	Kifc3
Chromosome:	chr8
TSS:	97623727 (Transcription start site)
TES:	97637242 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:97691291-97714576
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10478

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037311	mSE_10478	chr8	97691291	97692160	869	301.06
CM037312	mSE_10478	chr8	97700514	97701282	768	121.15
CM037313	mSE_10478	chr8	97701562	97702942	1380	819.81
CM037314	mSE_10478	chr8	97704982	97705972	990	136.49
CM037315	mSE_10478	chr8	97707610	97708663	1053	117.49
CM037316	mSE_10478	chr8	97708809	97712746	3937	2229.55
CM037317	mSE_10478	chr8	97713015	97714576	1561	149.04