Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10480
Genomic locus:	chr7:133467442-133494995
Size/Length:	27553 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010689
Gene Symbol:	Lat
Chromosome:	chr7
TSS:	133507341 (Transcription start site)
TES:	133513048 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:133467442-133494995
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10480

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037016	mSE_10480	chr7	133467442	133469167	1725	2560.38
CM037017	mSE_10480	chr7	133469600	133471005	1405	428.93
CM037018	mSE_10480	chr7	133473181	133473848	667	233.6
CM037019	mSE_10480	chr7	133474279	133474875	596	353.2
CM037020	mSE_10480	chr7	133482460	133483577	1117	186.93
CM037021	mSE_10480	chr7	133487525	133489156	1631	860.94
CM037022	mSE_10480	chr7	133489654	133490539	885	158.14
CM037023	mSE_10480	chr7	133492089	133492745	656	165.61
CM037024	mSE_10480	chr7	133493227	133494995	1768	214.88