Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10483
Genomic locus:	chr16:64871498-64885396
Size/Length:	13898 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_178647
Gene Symbol:	Cggbp1
Chromosome:	chr16
TSS:	64851910 (Transcription start site)
TES:	64859317 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:64871498-64885396
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10483

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034955	mSE_10483	chr16	64871498	64874228	2730	1973.07
CM034956	mSE_10483	chr16	64875155	64877492	2337	1782.58
CM034957	mSE_10483	chr16	64878175	64879161	986	203.12
CM034958	mSE_10483	chr16	64880592	64881494	902	242.53
CM034959	mSE_10483	chr16	64883628	64885396	1768	722.18