Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10488
Genomic locus:	chr14:22289631-22306034
Size/Length:	16403 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Myst4
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:22289631-22306034
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10488

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034540	mSE_10488	chr14	22289631	22292466	2835	379.15
CM034541	mSE_10488	chr14	22293064	22293718	654	353.33
CM034542	mSE_10488	chr14	22294766	22295750	984	229.95
CM034543	mSE_10488	chr14	22295828	22296763	935	318.02
CM034544	mSE_10488	chr14	22297736	22298639	903	128
CM034545	mSE_10488	chr14	22298698	22302146	3448	1880.16
CM034546	mSE_10488	chr14	22303598	22306034	2436	747.42