Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10489
Genomic locus:	chr1:138462235-138469622
Size/Length:	7387 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001160251
Gene Symbol:	Zfp281
Chromosome:	chr1
TSS:	138521477 (Transcription start site)
TES:	138526968 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:138462235-138469622
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10489

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033488	mSE_10489	chr1	138462235	138463157	922	241.14
CM033489	mSE_10489	chr1	138463499	138464255	756	136.65
CM033490	mSE_10489	chr1	138465006	138468705	3699	3100
CM033491	mSE_10489	chr1	138468923	138469622	699	290.93