Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10490
Genomic locus:	chr15:102032487-102046838
Size/Length:	14351 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001289695
Gene Symbol:	Zfp740
Chromosome:	chr15
TSS:	102035001 (Transcription start site)
TES:	102046041 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:102032487-102046838
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10490

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034835	mSE_10490	chr15	102032487	102035882	3395	1188.88
CM034836	mSE_10490	chr15	102035931	102036767	836	102.19
CM034837	mSE_10490	chr15	102040593	102041968	1375	457.23
CM034838	mSE_10490	chr15	102042469	102045813	3344	1607.88
CM034839	mSE_10490	chr15	102046081	102046838	757	134.35