Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10496
Genomic locus:	chr13:55425129-55444763
Size/Length:	19634 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_016662
Gene Symbol:	Mxd3
Chromosome:	chr13
TSS:	55426528 (Transcription start site)
TES:	55431091 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:55425129-55444763
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10496

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034468	mSE_10496	chr13	55425129	55426327	1198	173.23
CM034469	mSE_10496	chr13	55426504	55427292	788	140.02
CM034470	mSE_10496	chr13	55430974	55433313	2339	1586.55
CM034471	mSE_10496	chr13	55437698	55439798	2100	816.89
CM034472	mSE_10496	chr13	55439806	55440626	820	457.2
CM034473	mSE_10496	chr13	55443808	55444763	955	326.3