Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10497
Genomic locus:	chr14:46062346-46084829
Size/Length:	22483 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019425
Gene Symbol:	Gnpnat1
Chromosome:	chr14
TSS:	45996095 (Transcription start site)
TES:	46008471 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:46062346-46084829
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10497

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034566	mSE_10497	chr14	46062346	46065927	3581	1685.47
CM034567	mSE_10497	chr14	46066174	46067561	1387	114.76
CM034568	mSE_10497	chr14	46072925	46074162	1237	132.84
CM034569	mSE_10497	chr14	46075152	46076471	1319	351.54
CM034570	mSE_10497	chr14	46076643	46077175	532	190.26
CM034571	mSE_10497	chr14	46082265	46084829	2564	1150.94