Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10498
Genomic locus:	chr4:43976757-43992516
Size/Length:	15759 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001002787
Gene Symbol:	Ccin
Chromosome:	chr4
TSS:	43996375 (Transcription start site)
TES:	43998405 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:43976757-43992516
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10498

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036037	mSE_10498	chr4	43976757	43980081	3324	1799.52
CM036038	mSE_10498	chr4	43984285	43985945	1660	617.95
CM036039	mSE_10498	chr4	43987085	43988516	1431	638.41
CM036040	mSE_10498	chr4	43988710	43989934	1224	740.6
CM036041	mSE_10498	chr4	43990838	43992516	1678	287.12